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Java Native Interface: Programmer's Guide and Specification
This book is the definitive resource and a comprehensive guide to working with the JNI. Entirely up-to-date, the book offers a tutorial, a detailed description of JNI features and programming techniques, JNI design justifications, and the official specification for all JNI types and functions.
Developing for the J2EE Tomcat Platform
This online J2EE guide include topics: Java Server Pages, JavaBeans, Tag Libraries, Introduction to Struts, Advanced Struts, Enterprise JavaBeans, A Case Study, Enterprise Objects Framework.  
Java 2 Enterprise Edition Developer's Guide
This is an online guide covering J2EE 1.2.1 edition.  
The Advanced Java/J2EE Tutorial
This is an online J2EE guide by Gopalan Suresh Raj.  
Java Transaction Design Strategies
This book is about how to design an effective transaction management strategy using the transaction models provided by Java-based frameworks such as EJB and Spring. Techniques, best practices, and pitfalls with each transaction model will be described.



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